Here is the yearly manga & light novel rankings for 2009 (Nov 17 2008 - Nov 22 2009).
Manga Ranking
Volume by volume
*1, 2,057,528 One Piece vol.53
*2, 1,963,696 One Piece vol.54
*3, 1,952,551 One Piece vol.52
*4, 1,810,410 One Piece vol.55
*5, 1,505,575 NANA vol.21
*6, 1,277,733 Fullmetal Alchemist vol.23
*7, 1,271,340 Fullmetal Alchemist vol.21
*8, 1,238,354 Fullmetal Alchemist vol.22
*9. 1,222,356 Naruto vol.45
10, 1,186,478 Naruto vol.47
11, 1,184,722 Nodame Cantabile vol.22
12, 1,119,917 Naruto vol.46
13, *,996,398 Naruto vol.48
14, *,955,085 Bleach vol.36
15, *,944,066 Bleach vol.37
16, *,888,622 Bleach vol.38
17, *,879,612 Saint Young Men vol.3
18, *,850,059 Bleach vol.40
19, *,841,028 Bleach vol.39
20, *.790,656 Kimi ni Todoke vol.8
21, *,741,831 Kimi ni Todoke vol.9
22, *,738,404 Bleach vol.41
23, *,692,649 Saint Young Men vol.4
24, *,659,512 Kuroshitsuji vol.6
25, *,642,263 Detective Conan vol.64
26th - 50th
! 26, *,641,606 Pluto vol.7
27, *,641,155 Katekyo Hitman Reborn! vol.23
28, *,636,506 D.Gray-man vol.17
29, *,633,052 Katekyo Hitman Reborn! vol.24
30, *,616,762 Kuroshitsuji vol.7
31, *,603,223 Detective Conan vol.65
32, *,601,347 Vagabond vol.29
33, *,592,537 Gintama vol.26
34, *,587,871 Katekyo Hitman Reborn! vol.25
35, *,587,464 Gintama vol.27
36, *,586,978 Glass Mask vol.43
37, *,574,661 Pluto vol.8
38, *,561,582 Gintama vol.28
39, *,556,422 Vagabond vol.30
40, *,547,499 Saint Young Men vol.1
41, *,525.802 D.Gray-man vol.18
42, *,520,281 Katekyo Hitman Reborn! vol.26
43, *,514,524 Ookiku Furikabutte vol.12
44, *,511,070 Gintama vol.29
45, *,511,065 Vagabond vol.41
46, *,508,124 3 Gatsu no Lion vol.2
47, *,496,962 3 Gatsu no Lion vol.3
48, *,494,509 Saint Young Men vol.2
49, *,488,106 xxxHOLiC vol.14
50, *,480,711 Ouran High School Host Club vol.14
Series by series
*1, 14,721,241 One Piece
*2, *6,836,494 Naruto
*3, *6,471,021 Bleach
*4, *5,810,522 Fullmetal Alchemist
*5, *4,733,511 Gintama
*6, *3,694,323 Katekyo Hitman Reborn!
*7, *3,076,659 Mei-chan no Shitsuji
*8, *2,886,942 Fairy Tail
*9, *2,655,379 20th Century Boys
10, *2,614,269 Saint Young Men
Light Novel & Picture Book Ranking
*1, 293,181 La Maison en Petits Cubes
*2, 186,132 Katekyo Hitman Reborn! Kakushidama vol.3
*3, 181,539 Saiunkoku Monogatari Extra vol.4
*4, 177,435 Summer Wars
*5, 177,232 Saiunkoku Monogatari vol.14
*6, 175,766 Gintama 3 Nen Z Gumi Ginpachi-sensei vol.4
*7, 151,322 Toradora! vol.10
*8, 150,556 Toaru Majutsu no Index vol.17
*9, 136,787 Toaru Majutsu no Index vol.18
10, 124,210 Zero no Tsukaima vol.16
11, 121,815 Gake no Ue no Ponyo
12, 116,238 Chrome Shelled Regios vol.12
13, 114,679 Kino no Tabi: the Beautiful World vol.13
14, 112,154 Shakugan no Shana vol.18
Source: Oricon Yearly Ranking
Credits: dtshyk
Edit: Sorry just realized there is a similar thread.