What are the differences??
Well, there were quite a few. Some are minor, but others are more important.
Some quick examples (before I go to bed):
In the manga there is a story about Vietnam, but in the anime they make it about Africa. Cyborg 008's backstory is different and related to this story.
Also Cyborg 008 has a different design of course (although technically he was first redesigned in one of the '80s movies).
Some of the other cyborgs have their histories altered a little. There are more episodes about the characters.
I've been meaning to make a Cyborg 009 thread eventually, and if I do, I'll try to think of more differences.
Did Toonami like skip a few episodes at some part? I remember watching one thing, then it shows 13 but it was like if they already made an introduction before like if they were in the middle of something.
I'm not sure. But I read somewhere that they skipped the episode about the dog.
If you do upload can you upload the arc where they face Apollo and co.?
I was planning on at least uploading the big fight scene from the Apollo arc, because it's cool.